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1 June 2023

Session 1:
Theorical Concepts
9h30 -10h30

Introduction to "Large Images" & IA

10h30 - 10h45

Coffee Break

Session 2:
Introduction to QuPath
10h45 - 11h30

Basic Concepts: 

  • Image properties
  • Create a project
11h30 - 12h30

Tools:

  • Annotations

            Exercise - Manual counting cells

  • Detections

            Exercise - Automatic cell detection

12h30-14h

Lunch Break

Session 3:
Brightfield Images
14h - 14h30

Stain Vectors:

  • How to set?
  • How to estimate?
14h30-15h15

Pixel Classification

15h15-15h45

Cell Classification 

15h45 - 16h

Coffee Break

16h - 16h30

Density Maps

Session 4:
Fluorescence Images
16h30 - 17h30
  • Simple multiplexed analysis 
  • Heatmaps

2 June 2023

9h30 - 11h

Multiplexed analysis with machine learning

11h-11h15

Coffee Break

Session 5:
Automated workflows
11h15 - 12h

Brief introduction to:

  • automated scripts
  • extensions
Session 6:
Call for help
12h - 13h

Call for help 

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